Publications

In the pipeline ...

Paris JR, King RA, Shaw S, Bourret V, Urbina MA, Hamilton PB, Moore, KA, Rowe D, Lange A, Usher J, Catchen JM, Wilson RW, Bury NR, Santos EM, Stevens JR. The relative roles of acclimation and adaptation in the evolution of metal-tolerance in brown trout (Salmo trutta L.).

Paris JR, Whiting JR, Daniel MJ, van der Zee M, Rodd FH, Hughes KA, Fraser BA. Ecological drivers of directional and balancing selection in wild guppy populations.

Paris JR*, Jenkins TL*, McFarling R, Robinson PC, Ferrer Obiol J, Stevens JR, van Aerle R, Santos EM. The genome of the European lobster (Homarus gammarus).

Ferrer Obiol J, Herranz JM, Paris JR, Whiting JR, González-Solís J, Rozas J, Riutort M. A robust framework for species delimitation in a speciation continuum of pelagic seabirds.

Bounas A, Ferrer Obiol J, Lombardo G, Secomandi S, Paris JR, …, Torroni A, Rubolini D. Population dynamics and adaptive evolution of a steppe-specialist raptor.

Nascimento-Schulze JC, Penaloza C, Paris JR, Whiting JR, Sanders MB, Bean TP, Houston RD, Fraser BA, Ellis R. Development of a medium density SNP-array for the blue mussel species-complex.

In Review

Whiting JR, Paris JR, van der Zee MJ, Fraser BA. (2021). AF-vapeR: A multivariate genome scan for detecting parallel evolution using allele frequency change vectors. bioRxiv: https://doi.org/10.1101/2021.09.17.460770.

Fully fledged

Paris JR, Whiting JR, Daniel MJ, Ferrer Obiol J, Parsons PJ, van der Zee MJ, Wheat CW, Hughes KA, Fraser BA. (2021). A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy. Nature Communications, 13: 1233 (2022). https://doi.org/10.1038/s41467-022-28895-4

2022

Whiting JR, Paris JR, Parsons PJ, Matthews S, Reynoso Y, Hughes KA, Reznick DN, Fraser BA (2021). On the genetic architecture of rapidly adapting and convergent life history traits in guppies. Heredity, 128(4): 250-260. https://doi.org/10.1038/s41437-022-00512-6

2022

Kardum Hjort C, Paris JR, Olsson P, Herbertsson L, de Miranda JR, Dudaniec RY, Smith HG. Genomic divergence and a lack of introgression between commercial and wild bumblebees (Bombus terrestris). Evolutionary Applications, 15(3): 365-382. https://doi.org/10.1111/eva.13346

2022

van der Zee MJ, Whiting JR, Paris JR, Bassar RD, Travis J, Weigel D, Reznick DN, Fraser BA (2022). Rapid genomic convergent evolution in experimental populations of Trinidadian guppies (Poecilia reticulata). Evolution Letters, 6(2): 149-161. https://doi.org/10.1002/evl3.272

2022

Whiting JR, Paris JR, van der Zee MJ, Parsons, PJ, Weigel D, Fraser BA. (2021). Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. PLoS genetics 17 (5), e1009566. https://doi.org/10.1371/journal.pgen.1009566

2021

Hamilton PB, Lockyer A, Uren Webster T, Studholme DJ, Paris JR, Baynes A, Nicol E, Dawson D, Moore KA, Farbos A, Jobling S, Stevens JR, Tyler CR (2020). Populations of roach (Rutilus rutilus) in English rivers show local adaptation in genes responsive o endocrine disrupting chemicals. Environmental Science and Technology, 24(54):15935-15945. https://doi.org/10.1021/acs.est.0c00957.

2020

Fraser BA, Whiting JR, Paris JR, Weadick CJ, Parsons PJ, Charlesworth D, Bergero R, Bemm F, Hoffmann M, Kottler VA, Liu C, Dreyer C, Weigel D (2020). Improved reference genome uncovers novel sex-linked regions in the guppy (Poecilia reticulata). Genome Biology and Evolution, evaa187. https://doi.org/10.1093/gbe/evaa187

2020

Lange A, Paris JR, Gharbi K, Cézard T, Miyagawa S, Iguchi T, Studholme DJ, Tyler CR (2020). A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach (Rutilus rutilus). Molecular Ecology Resources, 20(4):1007-1022. https://doi.org/10.1111/1755-0998.13166

2020

Sherman KD, Paris JR, King RA, Moore KA, Dahlgren CP, Knowles LC, Stump K, Stevens JR, Tyler CR. (2020). RAD-Seq analysis and in situ monitoring of Nassau grouper reveal fine-scale population structure and origins of aggregating fish. Frontiers in Marine Science, 7 (157). https://doi.org/10.3389/fmars.2020.00157.

2020

Paris JR, Usher J (2019). Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.) using synthetic genetic analysis. Scientific Reports, 9, 11827 (2019). https://doi.org/10.1038/s41598-019-48303-0

2019

Ikediashi C*, Paris JR*, King RA, Beaumont WRC, Ibbotson A, Stevens JR (2018). Atlantic salmon Salmo salar L. in the chalk streams of England are genetically unique. Journal of Fish Biology, 92(3): 621-641. https://doi.org/10.1111/jfb.13538 * Joint First Co-authors

2018

Paris JR*, Sherman KD*, Bell E, Boulenger C, Delord C, El-Mahdi MBM, Fairfield EA, Griffiths AM, Gutmann Roberts C., Hedger RD, Holman LE, Hooper LH, Humphries NE, Katsiadaki I, King RA, Lemopoulos A, Payne CJ, Peirson G, Richter KK, Taylor MI, Trueman CN, Hayden B, Stevens JR (2018). Understanding and managing fish populations: keeping the toolbox fit for purpose. Journal of Fish Biology, 92(3): 727-751. https://doi.org/10.1111/jfb.13549 * Joint First Co-authors

2018

Dillon MJ, Paris JR, Bowkett AE, Bundard MJ, Harding L, Sayers G, Beckman KM, O’Brien MF, Cromie RL, Bates K, Fisher MC, Stevens JR, Thornton CR. (2017). Tracking amphibian pathogens using lateral-flow technology. Peer-reviewed conference proceeding presented at Zoo and Wildlife Health Conference, Berlin, Germany.

2017

Paris JR, Stevens JR, Catchen JM (2017) Lost in parameter space: A road map for Stacks. Methods in Ecology and Evolution, 8(10): 1360-1373. https://doi.org/10.1111/2041-210X.12775

2017

Paris JR, King RA, Stevens JR (2015) Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo trutta L.) populations. Evolutionary Applications, 8(6):573-585. https://doi.org/10.1111/eva.12266

2015